first commit

graphify-out/.graphify_labels.json

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+{"0": "TOTP & Web Token Auth", "1": "ACME/JWS Client", "2": "CalDAV/CardDAV Handlers", "3": "IMAP Command Parser", "4": "Mail Provider Abstraction", "5": "Server Config & Bootstrap", "6": "Sieve Filter Interpreter", "7": "DB Mutation Queries", "8": "IMAP Server Loop", "9": "POP3 Server Loop", "10": "JMAP Auth & Sessions", "11": "SMTP Session Header Parsing", "12": "Admin API Handlers", "13": "IMAP Client", "14": "DKIM Key Signing", "15": "Outbound Delivery Queue", "16": "SMTP Server Networking", "17": "Linked Account & Alias Queries", "18": "TCP Server Lifecycle", "19": "Calendar/Contact/TLS Queries", "20": "OAuth2 Config", "21": "Go-No-Deps Web App Pattern", "22": "GoMail Build Phases Overview", "23": "Quarantine & Message Queries", "24": "iCal Parsing & Fuzzing", "25": "LLM Spam Stage", "26": "vCard Parsing & Fuzzing", "27": "Admin Portal Bugs & CRUD", "28": "Spam Pipeline Orchestrator", "29": "SPF Stage", "30": "TCP Boundary & Rate-Limit Findings", "31": "Domain/Tenant Queries", "32": "Rspamd Stage", "33": "Per-IP Rate Limiter", "34": "ClamAV Stage", "35": "DMARC Stage", "36": "Spam Header Injection Stage", "37": "Iterative Build Discipline Skill", "38": "Deployment & DNS Setup", "39": "HTTP Middleware", "40": "URL Extraction Stage", "41": "SQLite Deadlock Findings", "42": "List Rule Queries", "43": "Sieve Script Queries", "44": "Mail Context Domain Helpers", "45": "Calendar Object Queries", "46": "Contact Queries", "47": "Shared api() Fetch Convention", "48": "Session Continuity Practices", "49": "Scope Prioritization Practices", "50": "DB Migrations", "51": "Shared esc() Helper", "52": "SPA Login/Logout", "53": "SPA App Boot/Routing", "54": "Graphify Project Rules", "55": "Embedded Assets (admin)", "56": "Admin Handlers Entry", "57": "Admin Dashboard Loader", "58": "Admin SPA Router", "59": "Webmail Bootstrap", "60": "Embedded Assets (webmail)", "61": "Raw MIME Body Extractor", "62": "Webmail Message Actions", "63": "Go Module Root"}

graphify-out/.graphify_python

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+/home/haku/.local/share/uv/tools/graphifyy/bin/python

graphify-out/.graphify_root

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+/home/haku/projects/webmail

graphify-out/GRAPH_REPORT.md

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+# Graph Report - .  (2026-08-09)
+
+## Corpus Check
+- 78 files · ~64,934 words
+- Verdict: corpus is large enough that graph structure adds value.
+
+## Summary
+- 953 nodes · 2017 edges · 64 communities (48 shown, 16 thin omitted)
+- Extraction: 91% EXTRACTED · 8% INFERRED · 0% AMBIGUOUS · INFERRED: 170 edges (avg confidence: 0.82)
+- Token cost: 134,823 input · 0 output
+
+## Community Hubs (Navigation)
+- TOTP & Web Token Auth
+- ACME/JWS Client
+- CalDAV/CardDAV Handlers
+- IMAP Command Parser
+- Mail Provider Abstraction
+- Server Config & Bootstrap
+- Sieve Filter Interpreter
+- DB Mutation Queries
+- IMAP Server Loop
+- POP3 Server Loop
+- JMAP Auth & Sessions
+- SMTP Session Header Parsing
+- Admin API Handlers
+- IMAP Client
+- DKIM Key Signing
+- Outbound Delivery Queue
+- SMTP Server Networking
+- Linked Account & Alias Queries
+- TCP Server Lifecycle
+- Calendar/Contact/TLS Queries
+- OAuth2 Config
+- Go-No-Deps Web App Pattern
+- GoMail Build Phases Overview
+- Quarantine & Message Queries
+- iCal Parsing & Fuzzing
+- LLM Spam Stage
+- vCard Parsing & Fuzzing
+- Admin Portal Bugs & CRUD
+- Spam Pipeline Orchestrator
+- SPF Stage
+- TCP Boundary & Rate-Limit Findings
+- Domain/Tenant Queries
+- Rspamd Stage
+- Per-IP Rate Limiter
+- ClamAV Stage
+- DMARC Stage
+- Spam Header Injection Stage
+- Iterative Build Discipline Skill
+- Deployment & DNS Setup
+- HTTP Middleware
+- URL Extraction Stage
+- SQLite Deadlock Findings
+- List Rule Queries
+- Sieve Script Queries
+- Mail Context Domain Helpers
+- Calendar Object Queries
+- Contact Queries
+- Shared api() Fetch Convention
+- Session Continuity Practices
+- Scope Prioritization Practices
+- DB Migrations
+- Shared esc() Helper
+- SPA Login/Logout
+- SPA App Boot/Routing
+- Graphify Project Rules
+- Admin SPA Router
+- Raw MIME Body Extractor
+- Go Module Root
+
+## God Nodes (most connected - your core abstractions)
+1. `DB` - 77 edges
+2. `User` - 56 edges
+3. `Handler` - 35 edges
+4. `Store` - 27 edges
+5. `session` - 25 edges
+6. `session` - 25 edges
+7. `writeJSON()` - 24 edges
+8. `writeErr()` - 24 edges
+9. `MasterKey` - 23 edges
+10. `session` - 20 edges
+
+## Surprising Connections (you probably didn't know these)
+- `base.html Flask-style Block Layout` --conceptually_related_to--> `GoMail Webmail SPA (index.html)`  [AMBIGUOUS]
+  .claude/go-web-app-no-deps-SKILL.md → internal/webmail/static/index.html
+- `Dark Tailwind CSS Custom-Property Palette` --semantically_similar_to--> `GoMail Admin SPA (index.html)`  [INFERRED] [semantically similar]
+  .claude/go-web-app-no-deps-SKILL.md → internal/admin/static/index.html
+- `Dark Tailwind CSS Custom-Property Palette` --semantically_similar_to--> `GoMail Webmail SPA (index.html)`  [INFERRED] [semantically similar]
+  .claude/go-web-app-no-deps-SKILL.md → internal/webmail/static/index.html
+- `Shared api() Fetch Helper Convention` --semantically_similar_to--> `api() fetch helper (admin)`  [INFERRED] [semantically similar]
+  .claude/go-web-app-no-deps-SKILL.md → internal/admin/static/index.html
+- `Shared api() Fetch Helper Convention` --semantically_similar_to--> `api() fetch helper (webmail)`  [INFERRED] [semantically similar]
+  .claude/go-web-app-no-deps-SKILL.md → internal/webmail/static/index.html
+
+## Import Cycles
+- None detected.
+
+## Hyperedges (group relationships)
+- **GoMail Project Documentation Set** — gomail_handover_overview, readme_gomail, gomail_action_plan_v4_overview, _claude_iterative_build_discipline_skill_gomail_project [INFERRED 0.85]
+- **Admin Portal CRUD Feature Set** — internal_admin_static_index_domains_crud, internal_admin_static_index_users_crud, internal_admin_static_index_rules_crud, internal_admin_static_index_queue_crud, internal_admin_static_index_quarantine [EXTRACTED 1.00]
+- **Recurring Bug-Pattern Documentation Across GoMail Docs** — _claude_iterative_build_discipline_skill_sqlite_single_conn, gomail_handover_sqlite_deadlock_bug, gomail_action_plan_v4_sqlite_deadlock_bug, _claude_iterative_build_discipline_skill_tcp_read_pattern, gomail_handover_tcp_bug, gomail_action_plan_v4_tcp_bug [INFERRED 0.85]
+
+## Communities (64 total, 16 thin omitted)
+
+### Community 0 - "TOTP & Web Token Auth"
+Cohesion: 0.10
+Nodes (34): User, decodeSecret(), Generate(), GenerateSecret(), Time, hotp(), ProvisioningURI(), Validate() (+26 more)
+
+### Community 1 - "ACME/JWS Client"
+Cohesion: 0.06
+Nodes (31): AccountKey, Authorization, Challenge, ChallengeResponder, Client, directory, jwk, Order (+23 more)
+
+### Community 2 - "CalDAV/CardDAV Handlers"
+Cohesion: 0.08
+Nodes (34): MailProvider, MasterKey, Handler, multistatusResponse, propSet, LinkedAccountProvider, Config, DB (+26 more)
+
+### Community 3 - "IMAP Command Parser"
+Cohesion: 0.06
+Nodes (24): MailboxEntry, state, addFlag(), expandFetchItems(), extractHeaders(), flagsToIMAP(), session, indexOf() (+16 more)
+
+### Community 4 - "Mail Provider Abstraction"
+Cohesion: 0.09
+Nodes (25): Folder, FullMessage, GoMailProvider, IMAPCredential, IMAPProvider, ListOpts, MessageHeader, OAuth2Credential (+17 more)
+
+### Community 5 - "Server Config & Bootstrap"
+Cohesion: 0.09
+Nodes (30): buildOAuthConfigs(), Config, main(), Config, DatabaseConfig, JMAPConfig, LinkedAccountsConfig, NotifyConfig (+22 more)
+
+### Community 6 - "Sieve Filter Interpreter"
+Cohesion: 0.12
+Nodes (20): evalTest(), execStatements(), Execute(), lookupHeader(), newLexer(), Parse(), FuzzParse(), F (+12 more)
+
+### Community 8 - "IMAP Server Loop"
+Cohesion: 0.12
+Nodes (17): Config, Context, DB, Duration, Listener, WaitGroup, NewServer(), escapeQuoted() (+9 more)
+
+### Community 9 - "POP3 Server Loop"
+Cohesion: 0.15
+Nodes (13): Config, Conn, Context, DB, Duration, Listener, ReadWriter, WaitGroup (+5 more)
+
+### Community 10 - "JMAP Auth & Sessions"
+Cohesion: 0.12
+Nodes (20): Scope, Authenticate(), checkAppPassword(), DB, Context, DB, Request, ResponseWriter (+12 more)
+
+### Community 11 - "SMTP Session Header Parsing"
+Cohesion: 0.16
+Nodes (15): extractHeader(), extractHeaderMap(), extractMessageID(), extractSubject(), Conn, Context, IP, ReadWriter (+7 more)
+
+### Community 12 - "Admin API Handlers"
+Cohesion: 0.20
+Nodes (14): filterDomainsByTenant(), Handler, DB, HandlerFunc, Request, ResponseWriter, ServeMux, NewHandler() (+6 more)
+
+### Community 13 - "IMAP Client"
+Cohesion: 0.15
+Nodes (12): Client, FetchedMessage, FolderInfo, SelectedInfo, Dial(), Config, Conn, Duration (+4 more)
+
+### Community 14 - "DKIM Key Signing"
+Cohesion: 0.14
+Nodes (20): KeyPair, ExtractSignatureInfo(), GenerateKeyPair(), PrivateKey, ParseDNSPublicKey(), ParsePrivateKey(), buildDKIMHeader(), canonicalizeBodyRelaxed() (+12 more)
+
+### Community 15 - "Outbound Delivery Queue"
+Cohesion: 0.18
+Nodes (11): backoffDuration(), domainOf(), DB, Duration, isPermanentError(), lookupMXHosts(), NewWorker(), Deliverer (+3 more)
+
+### Community 16 - "SMTP Server Networking"
+Cohesion: 0.19
+Nodes (14): connHost(), Addr, Config, Conn, Context, DB, Duration, Limiter (+6 more)
+
+### Community 17 - "Linked Account & Alias Queries"
+Cohesion: 0.14
+Nodes (11): Alias, AppPassword, CheckResult, LinkedAccount, LinkedAccountAuthType, MessageCheck, MFABackupCode, ReleaseToken (+3 more)
+
+### Community 18 - "TCP Server Lifecycle"
+Cohesion: 0.20
+Nodes (11): Server, connHost(), Addr, Config, Context, DB, Duration, Limiter (+3 more)
+
+### Community 19 - "Calendar/Contact/TLS Queries"
+Cohesion: 0.19
+Nodes (6): Addressbook, Calendar, OwnerType, Stats, TLSCert, uuidNew()
+
+### Community 20 - "OAuth2 Config"
+Cohesion: 0.23
+Nodes (9): Context, Time, truncate(), WellKnownEndpoints(), XOAUTH2SASLString(), Config, Token, tokenResponse (+1 more)
+
+### Community 21 - "Go-No-Deps Web App Pattern"
+Cohesion: 0.21
+Nodes (13): go-web-app-no-deps Packaged Skill (.skill zip), base.html Flask-style Block Layout, Template Block Bleeding Bug (ParseGlob shared namespace), Static Asset Cache-Busting via Version Query Param, Dark Tailwind CSS Custom-Property Palette, JS Function-in-Conditional Scoping Bug, No-Third-Party-Dependencies Principle, Go Web App No-Deps Pattern (skill) (+5 more)
+
+### Community 22 - "GoMail Build Phases Overview"
+Cohesion: 0.21
+Nodes (12): GoMail (referenced project), Wire-Format Structs Need Explicit Serialization Tags, cmd/e2etestN Disposable Test Pattern, GoMail Action Plan v4 Overview, Phase 5: IMAP/POP3/Auth, Phase 7: CalDAV/CardDAV, Phase 8: Webmail (JWT + REST API + SPA), Phase 9: JMAP Core/Mail Subset (+4 more)
+
+### Community 23 - "Quarantine & Message Queries"
+Cohesion: 0.15
+Nodes (5): Message, MessageVerdict, QuarantineEntry, QuarantineStatus, Time
+
+### Community 24 - "iCal Parsing & Fuzzing"
+Cohesion: 0.24
+Nodes (9): Event, escape(), FuzzParse(), F, Time, Parse(), splitProperty(), unescape() (+1 more)
+
+### Community 25 - "LLM Spam Stage"
+Cohesion: 0.29
+Nodes (7): extractLeadingDigits(), Context, Duration, chatCompletionRequest, chatCompletionResponse, chatMessage, LLMStage
+
+### Community 26 - "vCard Parsing & Fuzzing"
+Cohesion: 0.27
+Nodes (8): escape(), FuzzParse(), F, Parse(), splitProperty(), unescape(), unfold(), Card
+
+### Community 27 - "Admin Portal Bugs & CRUD"
+Cohesion: 0.29
+Nodes (10): Admin Domain Creation Missing Tenant Fallback Bug, Admin User Creation Missing domain_id Bug, Phase 11: Admin Portal, Quarantine: Admin Global Discard vs Webmail Per-User Release, Domains CRUD (loadDomains/createDomain/rotateDkim/deleteDomain), Quarantine Discard (admin), Outbound Queue Actions (retry/cancel), List Rules CRUD (+2 more)
+
+### Community 28 - "Spam Pipeline Orchestrator"
+Cohesion: 0.40
+Nodes (8): DefaultStages(), Config, Context, NewOrchestrator(), StagesFromConfig(), verdictFor(), Orchestrator, Stage
+
+### Community 29 - "SPF Stage"
+Cohesion: 0.40
+Nodes (7): checkSPF(), evaluateSPF(), Context, IP, matchCIDR(), spfOutcome, SPFStage
+
+### Community 30 - "TCP Boundary & Rate-Limit Findings"
+Cohesion: 0.25
+Nodes (9): bufio.Reader + io.ReadFull for TCP Protocol Boundaries, Genuine EICAR Byte-Level ClamAV Verification, Phase 10: OAuth2 + Gmail/M365 Multi-Account, Phase 14: Optional External Services (ClamAV/Rspamd/LLM), Phase 15: Hardening + Deploy, Token-Bucket Per-IP Rate Limiter, Fake clamd Server TCP Over-Read Bug, Suggested Next Session Scope (+1 more)
+
+### Community 32 - "Rspamd Stage"
+Cohesion: 0.36
+Nodes (5): Context, Duration, rspamdResponse, RspamdStage, rspamdSymbol
+
+### Community 33 - "Per-IP Rate Limiter"
+Cohesion: 0.33
+Nodes (5): Mutex, Limiter, Time, New(), bucket
+
+### Community 34 - "ClamAV Stage"
+Cohesion: 0.39
+Nodes (4): Context, Duration, parseClamAddr(), ClamAVStage
+
+### Community 35 - "DMARC Stage"
+Cohesion: 0.39
+Nodes (5): dmarcTag(), extractDomainFromHeader(), Context, orgDomain(), DMARCStage
+
+### Community 36 - "Spam Header Injection Stage"
+Cohesion: 0.33
+Nodes (4): Context, injectSpamHeaders(), HeaderStage, StageResult
+
+### Community 37 - "Iterative Build Discipline Skill"
+Cohesion: 0.33
+Nodes (6): iterative-build-discipline Packaged Skill (.skill zip), Core Principle: Compiles is Not Correct, Disposable Real End-to-End Test Pattern, Genuinely-Enforcing Fake Protocol Server Pattern, Negative-Path Tests as Non-Optional, Verify Against Published Test Vectors (RFC 6238)
+
+### Community 38 - "Deployment & DNS Setup"
+Cohesion: 0.47
+Nodes (6): Phase 13: TLS + ACME + DANE/MTA-STS, Sandbox Network/Toolchain Constraints, Immediate First Steps Setup, DNS Setup (MX/SPF/DKIM/DMARC), GoMail (Self-Hosted Email Server), TLS / ACME Quick Setup
+
+### Community 39 - "HTTP Middleware"
+Cohesion: 0.33
+Nodes (4): Handler, clientIP(), Limiter, Request
+
+### Community 40 - "URL Extraction Stage"
+Cohesion: 0.47
+Nodes (3): dedupe(), Context, URLStage
+
+### Community 41 - "SQLite Deadlock Findings"
+Cohesion: 0.50
+Nodes (5): SQLite Single-Connection-Pool Query/Exec Deadlock Pattern, Phase 12: Auth Hardening (TOTP/App Passwords/Reset), Rationale: Phase 13 Pulled Forward, ConsumeBackupCode SQLite Deadlock Bug, SQLite Query+Exec Deadlock Bug (documented)
+
+### Community 44 - "Mail Context Domain Helpers"
+Cohesion: 0.50
+Nodes (3): domainOf(), IP, MailContext
+
+### Community 47 - "Shared api() Fetch Convention"
+Cohesion: 1.00
+Nodes (3): Shared api() Fetch Helper Convention, api() fetch helper (admin), api() fetch helper (webmail)
+
+## Ambiguous Edges - Review These
+- `Template Renderer (fresh-instance-per-page)` → `GoMail Admin SPA (index.html)`  [AMBIGUOUS]
+  .claude/go-web-app-no-deps-SKILL.md · relation: conceptually_related_to
+- `base.html Flask-style Block Layout` → `GoMail Webmail SPA (index.html)`  [AMBIGUOUS]
+  .claude/go-web-app-no-deps-SKILL.md · relation: conceptually_related_to
+- `Security Basics: CSRF/Path-Traversal/Atomic-Write/CSP` → `GoMail Admin SPA (index.html)`  [AMBIGUOUS]
+  .claude/go-web-app-no-deps-SKILL.md · relation: conceptually_related_to
+- `Security Basics: CSRF/Path-Traversal/Atomic-Write/CSP` → `GoMail Webmail SPA (index.html)`  [AMBIGUOUS]
+  .claude/go-web-app-no-deps-SKILL.md · relation: conceptually_related_to
+
+## Knowledge Gaps
+- **23 isolated node(s):** `webmail`, `IMAPCredential`, `DB`, `migration`, `response` (+18 more)
+  These have ≤1 connection - possible missing edges or undocumented components.
+- **16 thin communities (<3 nodes) omitted from report** — run `graphify query` to explore isolated nodes.
+
+## Suggested Questions
+_Questions this graph is uniquely positioned to answer:_
+
+- **What is the exact relationship between `Template Renderer (fresh-instance-per-page)` and `GoMail Admin SPA (index.html)`?**
+  _Edge tagged AMBIGUOUS (relation: conceptually_related_to) - confidence is low._
+- **What is the exact relationship between `base.html Flask-style Block Layout` and `GoMail Webmail SPA (index.html)`?**
+  _Edge tagged AMBIGUOUS (relation: conceptually_related_to) - confidence is low._
+- **What is the exact relationship between `Security Basics: CSRF/Path-Traversal/Atomic-Write/CSP` and `GoMail Admin SPA (index.html)`?**
+  _Edge tagged AMBIGUOUS (relation: conceptually_related_to) - confidence is low._
+- **What is the exact relationship between `Security Basics: CSRF/Path-Traversal/Atomic-Write/CSP` and `GoMail Webmail SPA (index.html)`?**
+  _Edge tagged AMBIGUOUS (relation: conceptually_related_to) - confidence is low._
+- **Why does `User` connect `TOTP & Web Token Auth` to `CalDAV/CardDAV Handlers`, `IMAP Command Parser`, `Mail Provider Abstraction`, `DB Mutation Queries`, `IMAP Server Loop`, `POP3 Server Loop`, `JMAP Auth & Sessions`, `SMTP Session Header Parsing`, `Admin API Handlers`, `Linked Account & Alias Queries`?**
+  _High betweenness centrality (0.323) - this node is a cross-community bridge._
+- **Why does `Store` connect `CalDAV/CardDAV Handlers` to `TOTP & Web Token Auth`, `Mail Provider Abstraction`, `POP3 Server Loop`, `JMAP Auth & Sessions`, `Outbound Delivery Queue`, `SMTP Server Networking`, `TCP Server Lifecycle`?**
+  _High betweenness centrality (0.109) - this node is a cross-community bridge._
+- **Why does `DB` connect `DB Mutation Queries` to `IMAP Command Parser`, `List Rule Queries`, `Sieve Script Queries`, `Calendar Object Queries`, `Contact Queries`, `Linked Account & Alias Queries`, `Calendar/Contact/TLS Queries`, `Quarantine & Message Queries`, `Domain/Tenant Queries`?**
+  _High betweenness centrality (0.098) - this node is a cross-community bridge._

graphify-out/cache/ast/v0.9.37/0381ceabb7b4040ef7f7cc7e9733c8b93144b57f738f6f09af2719baf07ca2d7.json

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graphify-out/cache/ast/v0.9.37/25a9bf3182e841181f89957aabea6e645995dab5b44477988e5bb6c4897ecc6b.json

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graphify-out/cache/ast/v0.9.37/53b9d444a4779e2fe0df289028ea78e65f5135141e615008b1548d7fa1376ed8.json

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graphify-out/cache/ast/v0.9.37/540e1c2d50f788862609c1b086a9b6fc770c33db243f99f9cfc177bb17f79cbe.json

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graphify-out/cache/ast/v0.9.37/5a51b73b432cab266a6bdd6709cc439906627143288b595a12b7dfa8796c57d9.json

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graphify-out/cache/ast/v0.9.37/b4f823f3a797fba2164ac25f638d64dc7f2992903ffbb5a3d48fc7b809aafcf5.json

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graphify-out/cache/ast/v0.9.37/c6fedb9529ebcc44e44e30d029806781775b88f996b988d46e5e79555cb9b691.json

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graphify-out/cache/ast/v0.9.37/d8d3d8ab1b6673c3adf6f7953dcaa01fd929e189baacdec0a433edcd977cc1fc.json

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